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Hello thanks for developing this interesting tool!
I'm preparing a meta-analysis, and I wanted to explore the eukaryotic component of the microbiome with EukDetect. However, after reviewing the doc…
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Dears,
Thanks for making a great program. I've run into an error message and I am looking for guidance on how to resolve it.
I have installed MitoFlex on my Linux Ubuntu OS and have installed al…
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Hi Joey
I have been using phyloseq a lot on many projects and find it very useful.
The sample data slot is really useful for analysing relationships between the microbiome and sample metadata, and …
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Hi Daniel,
I am trying to carve around 3000 genomes I obtained from a complete metagenomics dataset.
I was able to carve most of them, but the last ~150 are giving me a hard time.
Below is the ou…
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Add microbiology examples for licensed data and explain the licensed used there.
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Hi,
Summary: I had noticed a discrepancy in the quantified basepair differences between 2 metagenome-assembled genomes (MAGs) by pyANI via the Anvi'o software using the ANIm method when compared to…
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Hi,
Thank you for the great tool. I'm new to picrust2 and wanted to ask two questions (I apologise if their silly). I read the paper but am still slightly confused.
1. picrust2 uses its own re…
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Hi again I think it will be helpful to clarify for me regarding alpha diversity
1. I don't think that I need the sequence or a database sequence ID for the taxon, ASV1, ASV2 would be enough?
2. in …
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Hi I am running into issues where I get about 30% failure rate with the error found in the subject.
These are re-run successfully. I am wondering if you have experience with this type of error?
…
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Hi,
I am aware that it is recommended that "raw" data is used as input for ANCOM and ANCOMBC. In the context of amplicon data it is clear that this means count data that has not been normalised for…