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Thanks a lot for releasing metaphlan3.
Is there any availble metaphlan3 phylogenetic tree? any easy way to compute one?
Thanks a lot.
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### Checklist
- [x] There are [no similar issues or pull requests](https://github.com/taxprofiler/taxpasta/issues) for this yet.
## Describe the solution you would like.
We should support…
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### Description of feature
These should be 3-5 'real life' samples that you would profile against.
Ideally these would be shortread/long read pairs.
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### Description of feature
Where possible, in addition to our standardisation tool with taxpasta, we should also try and support 'native' OTU tables, as we already have for mOTUs:
| Tool | Merge…
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Hi
Our government servers do not have access to dropbox is there a way to get all the files needed to run metaPhlAn without using dropbox? I can download the file (file_list.txt)to my local computer…
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### Description of the bug
Getting the following error:
```
Command error:
Error: invalid configuration, cannot specify resource limits without cgroups v2 and --cgroup-manager=systemd
```
…
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Please submit PRs fixing these modules to my fork:
https://github.com/drpatelh/nf-core-modules/tree/update
You should be able to run `pytest` as normal but the options are now in a `nextflow.confi…
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### Description of feature
If possible...
Currently supported by MultiQC
This can be closed when:
- [x] FASTQC
- [x] ADAPTERREMOVAL
- [x] FASTP
- [x] BBDUK (I think) [Possible] [@jfy133…
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Hi, I'm wondering is GMHI compatible with Metaphlan3?
Thank you!
xuahe updated
2 years ago
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Hi!
I'm trying to use the output of kreport2mpa for humann3 however it needs the mpa file to be in metaphlan3 output style. Is there anyway to implement this in kreport2mpa?
Edit: I've had a clo…