-
Followed documentation [here](https://pymlst.readthedocs.io/en/latest/documentation/cgmlst/other_analysis.html#recombination) to perform recombination analysis.
`wgMLST recombination -h`
This co…
-
Thank you for your efforts on this project, looks really cool! I'm genuinely interested in utilizing RawAlign for my microbial genomics & nanopore work. However, while attempting to set it up, I encou…
-
## Description
Microsalt cases are stuck on "Running" in statusdb which is causing them to not store in housekeeper.
## Suggested solution
Set cases to "Empty" in statusdb when they have comp…
-
Hi,
I'm using breseq to call mutations in populations resulting from a lab evolution experiment. I encounter some mutations in intergenic regions, listed by breseq as geneX/geneY . In the column gene…
-
Draft content for block 2 of the workshop.
superset of issues #24, #25, #26.
Getting data from:
- list of Genbank IDs (@KatherineCaley todo)
- EnsemblLite (@GavinHuttley todo)
- Published…
-
Hello NetCoMi developer,
Please allow me to create this issue, with extensive reading/googling in recent days, I just feel here might be the best place to ask this question.
In a manuscript we g…
-
### Page: [Marine Metagenomics](https://rdmkit.elixir-europe.org/marine_metagenomics_assembly)
In pull request #1249, we are implementing changes to how we handle tools, resulting in different rules …
-
## Description
QoS is set to high for all jobs in microSALT, instead QoS should be set based on the priority of the case.
## This can be closed when
QoS is set according to priority of case.
…
-
I use the latest `canu` release under Red Hat Enterprise Linux release 8.6 with slurm 22.05.7. I used this script:
`/home/fk8jybr/program/canu-2.2/bin/canu -p 0.070 -d /project/denolen/output/canu-…
-
When this issue was opened, 151 active ontologies in the OBO Foundry did not have a `publications:` entry in their metadata. This field is used to generate the citation information on the ontology pag…