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Hello,
I would like to inquire about using your web-based microbiome analysis tool, "MiCloud".
When importing data on your website, four files were required: an OTU/ASV table, taxonomy, metadata…
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* [Home · marbl/Krona Wiki](https://github.com/marbl/Krona/wiki)
* [cpauvert/psadd: PSADD -- PhyloSeq ADDitions](https://github.com/cpauvert/psadd)
* [plot_krona: Interactive Taxonomy plot with Kron…
bbest updated
6 years ago
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Hi Lucas,
I just read your paper on _**Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples**_, which illustrated the benefits of incorporating phylogeny int…
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Hello!
First of all, thank you for clearly addressing the issue of compositionality and the high probability of artifacts in ordination methodology.
I wanted to ask if there would be any R ver…
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Thanks for this interesting piece of work for microbiome analysis and interpretation.
Making the package available through CRAN (or Bioconductor). This could support the handling of dependencies an…
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Hi there, when i use SMTa for microbe analysis in visium data, i noticed that the nt database is too large and time consuming.
![114027](https://github.com/affinis/SMTa/assets/36031820/17f79c24-88b0-…
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Hi,
thanks for this great package! I am trying to use SAFE for the annotation of metadata on a low-dimensional graph representation of microbiome abundance information (similar to: https://genomebi…
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https://github.com/waldronlab/MicrobiomeWorkshop with @katiasmirn and @zhaoni153
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This recent paper presents Analysis of Composition of Microbiomes (ANCOM)
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4450248/
Congrats @wdwvt1, @rob-knight! I would love to see this method in qiime!…
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Dear MPSE developer,
Recently I try to use MicrobiotaProcess to do microbiome data analysis. This is a very nice R package as far as I know.
So, I installed it and learn it based on the [documen…