-
@jklynch I've been been thinking about the unit testing features you've suggested, since in your application you suggested Googles C++ Unit Testing Framework, I took it for a spin, I liked it . Since …
-
Hey all, I am starting to try to integrate kraken2 in my Mothur pipeline. I really love Mothur, but the taxonomic assignation is not optimal for my situation. This is a work in progress so far as I am…
-
#### Parent Issue: #7
The obvious place to apply parallelization for the new _Random Forest_ module is the **tree creation** process. If we have _N_ number of trees and _T_ training sets, random fore…
-
MTS: https://toolshed.g2.bx.psu.edu/view/dcorreia/newick_display/3200899efad9
Tool: Newick display - Display a phylogenetic tree as SVG v1.6
Tutorial: http://galaxyproject.github.io/training-mat…
-
Hi Pat
I'm still working on getting the nanopore reads through mothur. Pre.clustering seems to work but then get this error? I thought that maybe it crashed with not enough mem so reran with 50gb a…
-
```
run-data-managers -a yoooooo -g http://192.168.XXX.XXX:8080 --config run_data_managers.yaml -v
```
My run_data_managers.yaml
```yaml
data_managers:
- id: toolshed.g2.bx.psu.edu/repos/…
-
There are many cases where test parameters are used that are not defined in the inputs.
I guess most cases are easy to solve, but may require a bit of research:
- check if the parameter was th…
-
Use mothur's align.seqs function to align sequences in reference sequence fasta file to the SILVA reference alignment.
-
Hello and thanks for this tool. Recently I applied the BEExact database to a dataset from an EFB outbreak. The number one OTU came up as:
Bacteria(100);Firmicutes(100);Bacilli(100);Lactobacillale…
-
Tutorial [here](http://joey711.github.io/phyloseq-demo/phyloseq-demo.html), including instructions for importing results from mothur.