azmfaridee mothur issues

azmfaridee / mothur

This is GSoC2012 fork of 'Mothur'. We are trying to implement a number of 'Feature Selection' algorithms for microbial ecology data and incorporate them into mother's main codebase.

https://github.com/mothur/mothur

GNU General Public License v3.0

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issues

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Confusion Matrix Implementation

#43 rafi-kamal closed 10 years ago
0
Convert ref

#42 rafi-kamal closed 4 years ago
1
Performance Improvement in Random Forest Implementation

#41 rafi-kamal opened 11 years ago
0
Implement classification

#40 kdiverson opened 11 years ago
12
Memory leak in RandomForest

#39 mothur-westcott opened 11 years ago
1
Implement Gini Index Calculation

#38 azmfaridee opened 11 years ago
0
OTU feature rank

#37 kdiverson opened 11 years ago
0
Implement Feature Abundance Cut-off

#36 azmfaridee opened 11 years ago
2
Implement Cost Complexity Pruning

#35 azmfaridee opened 11 years ago
0
Investigate F-Score based Feature Ranking

#34 azmfaridee opened 11 years ago
1
Fix the Memory Not Released Bug

#33 azmfaridee opened 11 years ago
3
Implement Mean Decrease in Accuracy for Feature Ranking Like the R Version

#32 azmfaridee opened 11 years ago
1
Implement a Confusion Matrix like the R version

#31 azmfaridee opened 11 years ago
0
Fix Output From Multi-Class Datasets

#30 kdiverson opened 11 years ago
2
Design the Mechanism of Writing the Output of Random Forest Algorithm into an Output File

#29 azmfaridee closed 11 years ago
2
Replace Normal Debug Messages in C++ implementation with MothurOut Code

#28 azmfaridee closed 11 years ago
2
Port the Pruning Code from Python Prototype to C++ Version

#27 azmfaridee closed 11 years ago
0
On Negative Impact of Feature Selection on Bagging

#26 azmfaridee opened 11 years ago
1
Week 14, 15 & 16: Make the Ported C++ Code and Mock Module Work Together with Each Other

#25 azmfaridee closed 11 years ago
3
Finalize "CommandParameters" in "setParameters" method of "ClassifySharedCommand"

#24 azmfaridee closed 11 years ago
3
Week 12 & 13: Continue Working in Mothur Code Integration

#23 azmfaridee closed 11 years ago
1
Implement Information Gain Ratio to Replace Basic Information Gain

#22 azmfaridee closed 11 years ago
17
Week 11: Start Working in Mothur Code Integration

#21 azmfaridee closed 11 years ago
3
Week 10: Finish the Implementation of Regularized Radom Forest Framework, Tune Parameters and if possible implement Pruning of the Trees

#20 azmfaridee opened 12 years ago
2
Week 9: Implement Regularized Radom Forest Framework on top of Current Random Forest Implementation and Tune Parameters

#19 azmfaridee closed 11 years ago
2
Choosing a Good Random Number Generator (RNG) a.k.a "Treading Into the Mucky Waters of RNG"

#18 azmfaridee opened 12 years ago
5
Week 8: Start of Parameter Tuning & Preliminary Evaluation of the Implementation

#17 azmfaridee closed 11 years ago
5
Week 7: Finish the Implementation of Random Forest Algorithm

#16 azmfaridee closed 11 years ago
6
Week 6: Implement the Core Part of Random Forest Algorithm

#15 azmfaridee closed 12 years ago
1
Week 5: Implement the Basic Building Blocks of Random Forest Algorithm

#14 azmfaridee closed 12 years ago
2
Take a Deeper Review on the Paper "Feature Selection via Regularized Trees"

#13 azmfaridee closed 11 years ago
1
Track Upstream Mothur Branch and Update Our Master Branch from That

#12 azmfaridee closed 12 years ago
3
Review the Literature of 'Parameter Selection' and Create a wiki Page to Document the Findings

#11 azmfaridee closed 11 years ago
14
Investigate the Best Practices for Parameter Tuning/Estimation for Random Forest

#10 azmfaridee closed 11 years ago
0
Create Code Schematics/Pseudocode for the Random Forest Implementation

#9 azmfaridee closed 11 years ago
2
Investigate The Possible Places of Parallelization in the Random Forest Classifier

#8 azmfaridee opened 12 years ago
1
Investigate Mothur's Multithreading/Multiprocessing API

#7 azmfaridee opened 12 years ago
0
Find a Way to Merge 'train' and 'inquire' Commands Into One Single Command

#6 azmfaridee closed 11 years ago
7
Find Mothur's Common Practices

#5 azmfaridee closed 11 years ago
1
Make a List of Reusable Classes/Functions from Mothur

#4 azmfaridee closed 11 years ago
12
Classification/Regression or Both!

#3 azmfaridee closed 11 years ago
11
Prepare Datasets for The Regularized Random Forest Algorithm

#2 azmfaridee closed 11 years ago
7
Determine Performance Evaluation Criteria

#1 azmfaridee opened 12 years ago
0