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Hi there,
It seems clear that ms2pip can predict fragment ion intensities within an MS/MS spectra from a peptide sequence alone, but can it also predict how well the peptide would ionize from its s…
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Dear ms2pip developers,
Thank you for the new version of your tool. It works really well.
I have rather a question than an issue: Is there any way to include semi-specific or even unspecific enz…
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Dear all,
I run MS2PIP on a workstation which would has 24 cores and therefore set --num_cpu accordingly. however, when running the program, there is a warning that "NumExpr detected 24 cores but '…
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Hi,
I tried to process a batch of .peprec files in ms2pip (those that Ralf generated for me in issue #61), to create predicted output files in spectronaut.csv format instead of just csv. I noticed…
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Hi!
Just trying to run the standard example, but likely there is some incompatibilty between versions
```{bash}
ms2pip-single-prediction -o prediction.png PGAQANPYSR "-" 3
Downloading model_2…
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Hi,
I want to use deeplc to predict retention times for some peptides, but since I am using maxquant for the analysis, I don't know how to convert the peptide modifications of the output file to th…
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- Describe the issue or question:
Dear all,
I have python 3.10 installed on my computer and tried to use library generation with FragPipe. However, this version is not yet completely supported …
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Hi,
I am running ms2pip through ms2resocre, and i get that following Index error.
Merging results
multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/h…
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To enable DeepLC calibration and other DeepLC options in fasta2speclib, the fasta2speclib config (from json file) should be passed to the `ms2pip.retention_time` module:
Replace this line:
https:/…
RalfG updated
2 years ago
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hello
my HPC platform doesn't allow connection to the internet. How do I simply download the models without running ms2pip. I can't seem to import predict_xgboost.py module because of circular import…