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We should make the usage of datasets more heterogenous across the notebooks in the docs.
Practically:
- [ ] select 1, max 3, small datasets (
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https://github.com/Nanostring-Biostats/DSPPlugins/blob/58c6a948c2732177c7d293e64e0af5dcdd3cd4ff/DSPPlugSpatialDecon/SpatialDecon_plugin.R#L163
Task execution server: R-serve failure. Error in decon…
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Hi
After reading RCC and annotation file I get this error
```
> ## QC plots
> girafe( ggobj = autoplot( demoData , "lane-bindingDensity" ) )
Error:
! Problem while setting up geom aesth…
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Hi InSituType team,
We'd like to use your method for supervised prediction of our cosmx data. I noticed that the reference matrix is not from your precious annotated NSCLC but something like a bulk…
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Hi,
I have come across the need to analyse GeoMx data that is generated in two different instances. I have successfully run your tool in two separate instances but as these two projects are related…
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Hello,
Can someone help me to understand the QC process?
Based on this link:
https://www.bioconductor.org/packages/release/workflows/vignettes/GeoMxWorkflows/inst/doc/GeomxTools_RNA-NGS_Analysi…
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I am currently using this package with a dataset that has been taken through the nSolver software to see if i can get the same answers as doing the entire thing in R would greatly improve our workflow…
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Currently, we are experiencing extreme overrepresentation of Hypendymal cells after running InSituType.
It seems to be the go-to celltype when the data is shallow. Although the data has passed QC me…
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Need to create a dataset with p-values and estimates for a set of real gene names.
Creating random estimates and p-values for genes from a NanoString panel would be an easy way to go.
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We have a gene set derived from the [Nanostring nCounter PanCancer IO 360™ Panel](https://nanostring.com/products/ncounter-assays-panels/oncology/pancancer-io-360/). It's possible to download the gene…