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Hi Teng,
I am running Numbat on >40000 cells with the following settings to use only upgma tree: ncores=64, nni_cores = 96, skip_nj=True. However, I encounter the following error :
Error in if (…
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@ElBrogrammer and I discussed this while working on #420.
- [ ] should investigate building TreeNodes as the algorithm proceeds, rather than newick string, this will likely be more efficient (but may…
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This is just a suggestion based on some observations of estimating large (>10K sequences) trees. I note that it takes raxml-ng a long time to estimate the starting parsimony tree (I let it run for an …
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* [Home · marbl/Krona Wiki](https://github.com/marbl/Krona/wiki)
* [cpauvert/psadd: PSADD -- PhyloSeq ADDitions](https://github.com/cpauvert/psadd)
* [plot_krona: Interactive Taxonomy plot with Kron…
bbest updated
6 years ago
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I have a MSA file and wanted to create tree from it. I created the distance matrix first then created a ggtree for that. Now it works. My issue is I have a reverse branch in my tree. Something simila…
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R190S is becoming very convergent with 31del lineages. There's at least 10 each separate emergences of this under LB.1 and KP.2.3, and many emerging under KP.3.1.1.
From branch 12 of https://gith…
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### Motivation
![image](https://github.com/InternLM/lmdeploy/assets/15537456/748a9fd7-8cf6-4482-bd8d-4759b173979c)
when i run this pipe = pipeline('liuhaotian/llava-v1.5-13b',
…
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I looked into this issue raised by @janfassler. My analysis and discussion can be read [here](https://htmlpreview.github.io/?https://github.com/binhe-lab/C037-Cand-auris-adhesin/blob/master/01-global-…
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### Version
110.99.4 (Latest)
### Operating System
- [X] Any
- [ ] Linux
- [ ] macOS
- [ ] Windows
- [ ] Other Unix
### OS Version
_No response_
### Processor
- [X] Any
- [ ] Arm (using Rosetta…
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Hello,
when I use the `get_pcoa()` function
```
pcoares