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Currently we just have a `TRUE` or `FALSE` option, but it should be easy enough to implement both.
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Hi,
I am trying to run PrePH software on some sequences I extract using genomic coordinates and bedtools's getfasta. I am able to predict panhandles on most sequences but when I have to deal with l…
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The [Centrifuge website](https://www.ccb.jhu.edu/software/centrifuge/) has a link to the [NCBI nucleotide non-redundant sequences index](https://genome-idx.s3.amazonaws.com/centrifuge/nt_2018_3_3.tar.…
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#### Summary:
pyani v0.2.12, processing over 2,000 genome sequences reached out segmentation fault
#### Description:
I have dataset containing over 5,000 sequences. When Using pyani for pairwise…
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I have been using a core genome alignment as input of grapeTree stand-alone version, but it crashes when the alignment contains too many sequences because of a memory issue (I do not have enough memor…
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Is it possible to allow any nucleotide to map to a specific location without penalty?
For example, we have a reference sequence: G*AC, where * can be any nucleotide.
We want to allow GAAC, GTAC, G…
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Hi Ya~~o~~n,
I've expanded few sequences with flanking nucleotides, then I've aligned them, obtaining the MSA and consensus sequence.
However, after aligning the expanded sequences, I would like…
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**Description**
**Sub-lineage of:** KP.2.3
**Earliest sequence:** 2024-5-20, Singapore, EPI_ISL_19181759
**Most recent sequence:** 2024-8-19 (2 Canada, 1 Utah, USA)
**Continents circulating:** Nor…
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The shuffling should return randomized sequence while keep the same nucleotide freq (or even keep di-nucleotide freq) or AA freq for protein sequences. I need this functionality for RNA sequences and …
RNAer updated
9 years ago
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/rongxinzh/G4SNVHunter
Confirm the following by ed…