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I have 2 identical miniPCs as HTPC running libreELEC, Lenovo m93p.
HTPC1 is running Kodi 19.5.0, Git:19.5-Matrix, LibreELEC 10.0.4 (kernel: Linux 5.10.161)
HTPC2 is running Kodi 21.0.0, Git:21.0-Om…
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Hi there,
I've run into a new problem with running FeGenie. Previously I've run the script with no issue however now I receive the following error everytime I try to run
`Consolidating summary …
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Hello,
I've been doing some test with 454 data. I'm running metAMOS with metavelvet and fraggenescan, and stop at the FindORFS step. I initially wanted to use MetaGeneMark but it's not available for n…
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Hello @brianjohnhaas,
I was trying to annotate a StringTie transcriptome assembly, following this pipeline: gtf_to_alignment_gff3.pl -> TransDecoder.LongOrfs -> TransDecoder.Predict -> cdna_alignme…
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Hello!
Thank you for developing genomad!
Following on from this #62 ...
I'm trying to understand how the number of contigs binned to each MAG affects the number of plasmid and virus classif…
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Hi,
I have a question about the parameter `orf-filter` in the `easy-taxonomy` workflow.
What is this filter exactly doing? And what is recommended? And is the filter on or off at 0?
Thanks in…
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script needs to be modified - speak to Nayam
1. should run as a script with a path (argument) without the need to copy it into the folder
2. create a temp folder and remove it after execution
3. …
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Hello! I did:
$ CAT_pack add_names -i {classification file} -o **out.txt** -t {taxonomy folder} --only_official
and everything looks good but then when I try to run summarise:
$ CAT_pack summarise …
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We do wan't to point from the Questionnaire.item.definition to the Extension the element that is mapped
according to [https://hl7.org/fhir/questionnaire-definitions.html#Questionnaire.item.definition…
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## Short description of the problem
When users zoom into a region of genomic context that does not include the actual stop codon of an ORF, anvi-inspect will put a STP codon at the farthest downstr…