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**What topic do you wish to add?**
Human pathogen genomics analyses the genetic code of disease-causing organisms. This information can be used by researchers and public health authorities to identif…
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#### Summary:
It's not precisely established that ANIm identities are true metrics - we need to demonstrate and ensure this, otherwise the clique-based classification is not as sound as we'd hope.
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貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
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## User story
>As a curator
>I want the post-upload script to update the md5sum values or file sizes from the server to the database
>So that I can get those metadata into the database in an auto…
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When this issue was opened, 151 active ontologies in the OBO Foundry did not have a `publications:` entry in their metadata. This field is used to generate the citation information on the ontology pag…
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## Template Fixes:
- Removed unwanted spaces trialing ontology IDs of the `host (food production name)` field terms: "**Nursing pig [FOODON:00004297 ]**" and "**Tom (Gobbler) [FOODON:00004304 ]**".
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## New Term Requests: SIR & WRG
### Parent Class: antimicrobial resistance testing reference standard [ARO:3004360]
**Label:** Swedish Reference Group for Antibiotics (SIR)
**Definition:** SIR …
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I am running >20k Salmonella genomes with AMRfinder using the "--plus" switch and "-O Salmonella". In about 1% of the samples it will crash once the BLASTN starts for the point mutation search; if I r…
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After completing #1493, it's now time to do a bit of outreach to the community and ask all of the different members to add the `obofoundry` topic to their repos. It's pretty simple through the main pa…
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Observed that sometimes contaminants.fa is empty (due to failed download) and no error is thrown in preprocessing:downloadContamGenomes