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Hello,
I'm running Delly on a large WGS paired tumor-normal sample (from SEQC2) and ran into this error during the split-read assembly step of ```delly call```:
```
terminate called after thro…
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At the time of writing this is waiting on a file of all submissions from Quan. See following email thread:
> Hi Richard,
>
> Just to let you know, Quan will generate the full list but it will ta…
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* **PTHR ID & PTN node:**
PTN000385050 (PTHR15004)
* **Sequences with problematic annotation (ID + gene/protein name):**
Fly GatC (FBgn0064115)
Fly GatA (FBgn0260779)
Fly GatB (FBgn0039153)
…
sjm41 updated
3 months ago
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To date, we have not used any manifest created from FITS for any Plasmodium builds, but this is the aim going forwards. @magnusmanske has written code relevant to this task (https://github.com/malaria…
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Hi, I would greatly appreciate any insights into the following issues. The biggest yellow flag is that the .loom file generated from a recent 10X Chromium dataset (using the separate velocyto
comman…
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**Describe the bug**
Many VEuPathDB terms still have 'alternative label' values even though we now have 'VEuPathDB alternative label' and update it for each release. So the older 'alternative label' …
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Our partners at the Univ. Kansas have successfully produced Pf CLK1 and PKA-R in milligram quantities for ligand binding and structural studies. We previously predicted these two proteins as the most …
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My docking experiments of OSM-S-106 vs all crystal structures of Plasmodium kinases supports PKA (protein kinase A) as the top target (PDB 5kbf).
OSM-S-106 was docked into the ligand binding site w…
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I have mentioned this a few times before but I believe it would be best to leave this as a long term standing issue: Can the S4 drugs kill other pathogens besides Plasmodium falciparum? (Also, do thes…
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Hello, I'm using HASLR with nanopore and Illumina data to assemble a P. falciparum genome.
All nanopore data has around ~50x coverage.
All Illumina short reads are set as 2 paired-end fastq files …