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Hi, thanks for the tool and maintaining it!
I just ran it for the first time, and it output trimmed reads, but the initial output contains this error:
```
┌ Error: Error during initialization o…
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### Description of feature
When running low input libraries we are having issues with overrepresentation of polyG sequences in the data coming from the NovaseqX instrument. A possible solution is to …
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Running svaba on Terra/Firecloud, we have troubles at this step of `svaba run` for >30X Tumor/Normal WGS (from the logs)
```
...vcf - reading in the breakpoints file
...vcf sizeof empty VCFEntryP…
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Hello @cihga39871
I have been trying to use atria for the first time but everytime I try to run it I get the too many arguments error as follows:
Running script:
```
#!/usr/bin/env bash
#Data …
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This problem occurs with 11 out of a set of ~646 PNGs, all of which plopped out of the exact same processing pipeline, scanned on exactly the same hardware.
Both models (seg & rec) trained from bin…
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Hello,
I have a V3-V4 16s DNAr metabarcoding dataset of 68 samples with a read depth of 400-900K reads/sample. Samples were sequenced on a NovaSeq 6000 PE250. Primers were removed with Cutadapt, seq…
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Sometimes (could be related when read mate is on another chromosome?) when clicking on a "view mate in split screen" causes the views to crash.
Possibly a javascript error. Make sure to check what …
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Hi,
I've followed the steps you suggested (or explained in the manual).
Here's a summary of what I did:
1. Installed sequali via conda (python 3.8).
2. Added the ultra-long RA as the only "…
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Using idemux results in a high number of reads being assigned to the undetermined_R1 and undetermined_R2 fastq files.
Is this expected behaviour or are additional settings necessary to avoid this?
…
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The initial atropos command call (we are very close to determine what this will be) will need to change for 2-color chemistry runs.