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Hi, in the model fitting step, I notice that there is a problem:
```
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ValueError Tracebac…
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Hi, this is a well-organized pipeline that will facilitate readers in practicing within their projects. However, I cannot find the detailed information regarding the corresponding literature, which po…
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The web tool has support for new kinds of interactions we'd like to include eventually:
The output of Garnet should be changed to indicate what genes were used to predict a TF was important (i.e. t…
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Hi!
Thanks for your perfect work! I'm looking for a method which can generate virtual perturbed data. When I notice GenKi can predict the effect after perturbation of certain target, I wonder if Genk…
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One of the issues I may be facing in running AUGUSTUS on a new genome is the possibility that it has substantial variations in GC% content in different parts of the genome. As has been noted elsewher…
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Thanks for the tool it sounds very useful! I want to use it to annotate the viruses I find in my metagenomes but I have a few questions concerning the use of the tool:
1) In the literature (example…
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Hello,
I have an issue with the FASTA format. It is a FASTA format which was made from the Illumina Sequencing and annotated with KREGG. We have tried a first time wihtout Uniprot annotation and i…
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It seems that some of the most interesting genes to predict using expression will be genes that have targeted therapies. These genes are ideal, because we may be able identify unmutated samples that w…
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Hello, recently i ve got this issue about the predicted genes with trinity.
i wanna use the assembled genes with tirinity as inputs of PASA to predict the genes supported by transcripts, but the pr…
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To get an overview of what has been done:
- number of genes (download GFF - downloads the predicted set)
- number of genes people tried curation (download GFF)
- number of genes that passed autocheck
…
yeban updated
9 years ago