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Hello
I use your wonderful tool in order to plot the signal around the promoter regions. I'm wondering if there is an option to take the strand information into consideration. For example if I have a …
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Hello GuangchuangYu,
I have a question about annotatePeak.
I think people have already asked a lot of duplicates, but the answers to the issues or documents posted so far have not solved the que…
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@rawnakhoque I asked the PDF in our lab and he showed me that everything has been done in bash. Follow the installation and basic configuration step by step [here](http://homer.ucsd.edu/homer/introduc…
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I really love this tool and the output it gives, even for users like me.
From the RBP researcher point of view I have small suggestions:
- A normalization of overlaps like it is done in homer ( …
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Hi,
(in ATACseqQC 1.12.0)
the example of using plotCorrelation that is written in the ATACseqQC guide works out of the box only when asMates and bigFile parameters are FALSE in readBamFile. Otherwi…
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I am importing data from deeptools compute matrix. The import works fine but i get error while doing clustering.
My data does not not seems to have NA
compute matrix cmd
computeMatrix reference…
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**[why?]** We need to understand our public. It is important to know their opinions on Science Communication, whether they do it, whether they don't, and why. We also need to assess what do they need …
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Hi,
Thanks for the awesome package. I've got some questions.
1. How do I use MultiVelo on multiple samples? The demo seems to be for 1 sample only.
2. The peaks in my scATACseq dataset were …
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Hi,
Loads of work on the package, congratulations!
I wonder if it can be run on a smaller set of SNPs. We performed fine mapping in the past ending up with a list of 26 SNPs and would like to kn…
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Hello, I want to use PROmiRNA for mouse miRNA TSS prediction. While running the program, I bumped into problem like these. I wonder if it is because using the wrong -s file (gene start region gff), an…