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> http://dx.doi.org/10.1371/journal.pone.0141287
>
> **Motivation:** We introduce a new representation and feature extraction method for biological sequences. Named bio-vectors (BioVec) to refer to…
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### What would you like to Propose?
~ Would like to add Damerau-levenshtein distance Algorithm in Dynamic Programming folder.
### Issue details
The Damerau–Levenshtein distance is a measure of th…
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Hello,
I posted about this issue in the #438 but wasn't able to duplicate it reliably. I've encountered it again and have been able to duplicate it consistently on different machines (even with re-…
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Peptides FDRs do not correspond to protein FDRs.
Currently, large-scale studies often have dozens or hundreds of LC-MS runs that are being accumulated. Repeated measurements lead to an accumulation o…
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I am trying to direct-search HeLa raw file in DIA-NN 18. There is no searched data at the end. Below is the report.log which says
[25:57] Loading run D:\Jae_DIA_practice\1_200 ng HeLa digest (3 file…
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Hi,
EffectR is a brilliant package for identifying effectors.
I just had a question regarding the identification of proteins with custom motifs. For some reason, when I use a custom pattern, the r…
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Dear Maxime,
This is Jianshu, a bioinformatics PhD student at Georgia Tech. I am reaching out to you to discuss the possibility of applying the protein database structure you proposed in the kaamer…
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Hello @acesnik ,
I am opening this issue here so I can share some thoughts of what I perceive as some issues with the format of the output fasta file from Spritz to be used in FragPipe as initiated…
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- [ ] Implementar en front la "decodificación" del abstract que se entrega en _Inverted Index_
- [x] codificar en inverted index el abstract de scholar
- [x] codificar en inverted index el abstract de…
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Hello,
I am currently working on identification of conserved water molecules in proteins and was using DS Visualizer. I now have installed PyMol and also PyWATER. Unfortunately, the PyMol console rea…