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I'm working on a biological system with the following reactions:
1. 50 A A_50
2. A_50 + B A_50 B
I want to determine [A_50 B] as a function of [A]_initial.
I have setup a series of…
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## Questions
### Natural selection
1. Contrast the definitions of Melthusian fitness and Darwinian fitness. Compare their solutions under a simple selection pressure if you can. [answer](https…
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Just in case you weren't familiar with this, there is an xformers library that can allow for a >4x speed up on all transformer operations
https://github.com/facebookresearch/xformers
Could be low …
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Hi,
I am trying to run the code but I keep getting this error:
```
File "/home/ackbar03/proteins/GIStability/ML_Peptide/predict.py", line 10, in
SIF_Stability = model_predict(feat=pept…
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Let's do an RDKIT based example that shows the process of using SageWorks for rapid prototyping.
References:
- https://www.kaggle.com/code/vladislavkisin/tutorial-ml-in-chemistry-research-rdkit-mo…
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* **Term to be merged: Provide GO ID and term label**
protection from non-homologous end joining at telomere GO:0031848
* **Which term do you propose this term merge into? Provide GO ID and term…
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Hi,
I am testing GeneMark-ETP on fungal genomes. Haven't been successful. Does this work on fungi yet?
The error I get is
```
### create RNA-Seq hints ... done
### predict genes gmst
### pr…
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I'm trying to use the partial_hallucination_rewire notebook to replace part of a protein with a linker-like sequence that otherwise preserves the overall predicted structure (code below). To preserve …
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[e3nn](https://www.connectedpapers.com/main/c7215ab4589ce3590910c597e86b1aba8e460d49/e3nn%3A-Euclidean-Neural-Networks/graph)
```mermaid
flowchart TD;
A[Freeman,1991\nThe design and use of stee…