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**Submitting author:** @suchanek (Eric Suchanek)
**Repository:** https://github.com/suchanek/proteusPy
**Branch with paper.md** (empty if default branch):
**Version:** v0.95.5
**Editor:** @richardjgo…
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* PIGT version:
* Python version: 3.9
* Operating System: centos
### Description
Ran:
```
neuralplexer-inference --task=batched_structure_sampling \
--input-receptor …
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## Expected Behavior
I used colabfold to predict two monomer proteins cas9 and deaminase, and I wanted to continue to predict their possible complex structure by multimer method.
While the cas9 p…
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Protein structures in NGLview could be colored by their quality, eg. red for homology models and silver for experimental models. This gives a quick idea on the quality of information being presented. …
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Are the methods to plot the UMAP of the metagenomics dataset available?
I would like to generate a similar UMAP representation for about ~200,000 protein structures.
Any ideas where to start? Th…
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Hello ! I'm still new to learning on proteins and I was wondering how to train on the Structure Similarity Task (at least in an efficient manner) when using the graph format for PyTorch Geometric.
…
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https://doi.org/10.1038/nature11503
>The genome-wide identification of pairs of interacting proteins is an important step in the elucidation of cell regulatory mechanisms1, 2. Much of our present kno…
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Hi,
this seems an awesome and very much needed package! I have 2 feature request: would it be possible to add protein secondary structure annotation (helices and beta-sheets) and also domain annota…
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**Youtube**
- [x] [AlphaFold2, OpenFold, Protein Language Models and Beyond | Nazim Bouatta](https://www.youtube.com/watch?v=ON1ltprZKPo) from Molecular Modeling and Drug Discovery (M2D2) 2022
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kntkb updated
5 months ago
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Hi. First: great idea :) I've noticed a bunch of people I follow on twitter bumping this up... I wasn't confident enough to contribute in the first iteration years ago, but now I do wanna do stuff 🔥So…