-
I'm trying to make a docker file for this.But when I get it up and running it gives me an error:
```
ptm_1 | java.lang.ArrayIndexOutOfBoundsException: Index 8 out of bounds for length 8
ptm_1 |…
-
Related to #20 and the issues mentioned in there, I would suggest to extend ModelCIF to capture all new types of quality estimates introduced with AlphaFold 3 (AF3). I also had a look at RoseTTAFold-A…
-
Hi,
Is the model preset flag used when running alphafold multimer? I would like to be able to change the model weights, but as far as I can tell the argument is ignored. It seems like the multimer …
-
This issue was left unanswered in the standard. Let's come up with a proposal, implement it, and see if the committee for the standard has any issues with it.
-
I'm reading this [MoFi paper](https://pubs.acs.org/doi/pdf/10.1021/acs.analchem.8b00019) right now, and it's reminding me of @veitveit's concern that we need to allow room for scores in PTMs.
I thi…
-
I receive this error when loading MS Amanda result files created with SearchGUI:
```
[...]
File import completed. 496590 first hits imported (6689561 total) from 579600 spectra.
[496177 first hi…
-
hello, vitek
I have a problem for the raw.ptm, the protein name format: protein_12_S345, S345 is PTM site, but what the 12 strand for?
…
-
Hi,
I am encountering an error when using your tool to with structures produced by ColabFold.
Example command used:
```
perl protocol_QSproteome_single_uniprot.pl \
--pdb OG0002542.represe…
-
Pass through 225 card to guest VM, PTM function failure.
We can detected the PTM card in the sos. The log for sos:
lspci -s ab:00.0 -vv | grep -i PTM
PTMCap: Requester:+ Res…
-
The following link show a protein length of 699 for gene BRCA1 but PTM track has dots over 699
https://www.cbioportal.org/results/mutations?cancer_study_list=ov_tcga_pub&cancer_study_id=ov_tcga_pub&ge…