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Pulling data from (https://docs.qiime2.org/2019.1/tutorials/importing/)
download.file("https://data.qiime2.org/2019.1/tutorials/importing/feature-table-v100.biom",destfile = "feature-table-v100.bio…
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Hello,
I am having issues integrating decontam into Qiime2 as well as installing in R. When integrating into Qiime2, I am getting an error after running the command "qiime dev refresh-cache." I have…
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**Improvement Description**
We need to be able to run qiime dada2 denoise-ccs even if the data does not have primers or adapters. some users are receiving their data from sequencers without adapters,…
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MacQIIME Todds-Mac-Pro:qiime_to_lefse-master $ python qiime_to_lefse.py -m map_soil_final3.txt -t soil_phyloseq_json_L6.txt -c Description -o converted_2lefse.txt --clean
Traceback (most recent call…
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This standardizes the version string and how to refer to major/minor/etc details. See [verman](https://github.com/wasade/verman). As of the creation of this issue, the module lived under my organizati…
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This is important. Easter egg, at the minimum.
http://nbviewer.ipython.org/url/jakevdp.github.com/downloads/notebooks/XKCD_plots.ipynb
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Hi
we are panning to support QIIME on our Openstack-based infrastructure
would it be possible to release, together with the VirtualBox and AWS images an Openstack compatible one ? (like in qcow2 forma…
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...commands should use decorators:
``` python
class QIIMECommand(Command):
def run(self, **kwargs):
self._check_requirements(kwargs)
super(QIIMECommand, self).run(**kwargs)
de…
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A lot of suggestions from @wasade on #1543.
One key point is that all functions should take np arrays instead of lists.
Also, we should figure out what we can replace in here with scipy calls. Othe…
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Hello,
I am running lotus2 only for taxonomy assignment of ITS1 sequences (so -taxOnly) (which is great! works super fast). I assumed that the output file would contain the same number of sequences…