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transcript name (RefSeq id)を受け付けるが、NM_XXXX.Xのように.Xがついている場合に検索ができない問題を解決する必要がある。
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Hello,
For the following variant in VCF format
`chr19 1219320 . CACGTATATG CCCG`
This represents a variant that looks like this
`CACGTATATGGTG REF
CCCG--------GTG ALT`
We hav…
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Thanks for the overall great library for working with an... _interesting_... file format.
I ran into a failed assertion when I was trying to rotate records from [refseq mitochondria](https://ftp.nc…
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-searching for indexed reference genome to decrease computational resources needed for indexing
- links :
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_a…
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Hi,
When I run:
`download_genomes.sh "Methanosarcina"`
It gives me:
`find: refseq/bacteria: No such file or directory`
Any tips on downloading from an archaeal genus?
Many thanks!
Gao…
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Biopython/enterz.efetch issue with certain accession listed. Seems to effect all compete refseq accessions and some shotgun sequenced Refseq accessions.
List of effected accessions:
NC_008268
NC_012…
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Hello,
I want to install glimmer-mg but I don't know where I'm suppposed to indicate the path to the Refseq library I already have on my server?
Thank you
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Hello,
I am using a reference genome of Folsomia candida available via NCBI's datasets for RNA-Seq expression studies. A part of the gene/transcript annotation contains multiple mRNA / CDS annotatio…
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I downloaded refseq database and run kaiju for taxonomic assignment of sample DRR496098 downloaded from SRA, in the kaiju/bin directory using the command below;
./kaiju -t ../../kaiju_db/nodes.dmp -f…
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I am getting error while running:
kraken2-build --standard --db kraken2_db
Error:
rsync: link_stat "/refseq/archaea/assembly_summary.txt" (in genomes) failed: No such file or directory (2)
rsync…