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Hi,
Thanks so much for developing this tool, I'm excited to be able to use this in my long-read isoform analysis!
I have had a couple questions come up since looking through the output from some…
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I think, in this part, top_genes and bottom_genes have some overlap. If you set nlabel ==20, and print the data of top_genes and bottom_genes, you can find the overlap.
top_genes % arrange(padj) …
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Hi,
We recently detected that gff output form mirtop stats gives unexpected results. We got two entries for canonical (variant=NA for many miRNAs instead of a single one (one of the two in fact is …
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Hi,
I am trying to run this script and am successful to the point of "Generating spike normalized bedgraphs". At this point it doesn't seem to like my chrom_sizes file and it would be great if you…
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HI guys
It is not an issue it a question regarding enrichmenet analysis.
Do you recommend running pathway analysis without FDR cutt-off so it is independent of DGE genes?
I am a bit new to rna…
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Hi, We're getting the below error, near the end of the pipeline.
Any idea what the issue is?
Thanks
```
You provided these parameters:
YAML file: RNAseq_4-17-23.yaml
zUMIs directory: /gpfs…
gevro updated
5 months ago
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```bash
#!/bin/bash
script=/mnt/users/fabig/cluster_pipelines/RNAseq-analysis/RNA_map.sh
fdir=/mnt/SeqData1/bovine/ullevaal_cow_rna_nov_2016/sample_pool
genome=/mnt/users/tikn/seqdata1/bovine/…
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#### What analysis module should be updated and why?
Running the `sex-prediction-from-RNA-seq` module with the v13 kallisto data lead to the loss of feature names due to #474.
#### What cha…
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hello! First thanks a lot for providing a fantanstic tool for circRNA analysis!
I have an issue when running circ_quant, the nohup.out file says that: **TypeError: 'NoneType' object is not iterable.*…
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Hi,
I'm using STAR to do an RNAseq analysis on Staphylococcus aureus sRNA.
The aligment is working, but during the maping I have this Fatal error:
Transcriptome.cpp:18:Transcriptome: exiting b…
Mpvrd updated
3 months ago