-
Once all relevant tutorials are integrated on `scverse.org/learn`, probably the scanpy tutorials page should be retired altogether and just link there.
All other scverse core package should at lea…
grst updated
10 months ago
-
There was brief discussion of possibilities. I think having a name-collision (modulo case)
with python module is undesirable. Just my 2c.
-
> A solution would be to benchmark the polygon query and bounding box implementation for points and shapes and see if one is significantly faster than the other. Ideally the polygon query is fast enou…
-
https://github.com/scverse/scvi-tools/pull/2561
-
Hello,
I would like to use the trained hypoMap_model to annotate my data following the example notebook [link](https://github.com/lsteuernagel/mapscvi/blob/master/inst/python_notebook/hypoMap_new_d…
-
### Description of feature
Currently we only have a greedy guide assignment method implemented. It would be nice to have more to choose from.
-
### Please describe your wishes and possible alternatives to achieve the desired result.
Upon release (I would say as part of https://github.com/scverse/anndata/pull/1626), we should trigger CI in o…
-
### Description of feature
Blocked by https://github.com/owkin/PyDESeq2/issues/213
See also https://github.com/theislab/pertpy/blob/2cc7ff77695cb616bb3ab207b5e506c0880aadb1/pertpy/tools/_different…
grst updated
2 months ago
-
Hi everyone,
following a brief discussion with @burtonrj in #71: There is a Python implementation of `FlowSOM` by the original authors (https://github.com/saeyslab/FlowSOM_Python), which offers a c…
-
Hello,
I work with **spatialdata-plot version: 0.2.7.dev2+g6ffe22b** on the following visium HD data:
I hav…