-
I noticed that p-values smaller than about 1e-11 seem to suffer from numerical underflow and are reported as 0.0.
It seems that lightmotif is using `float32` internally, but theoretically `float32`…
-
Hello:
I run the example codes in the `README`:
```r
check_meme_install()
```
```bash
checking main install
✔ /home/dan/meme/bin
checking util installs
✔ /home/dan/meme/bin/dreme
✔ /…
-
Hello,
First off, great job on this publication. I really enjoyed reading the paper.
I've been trying to run the model myself, however I'm having trouble understanding the structure of the pdb f…
-
> Convolutional neural networks (CNNs) have been shown to perform exceptionally well in a variety of tasks, including biological sequence classification. Available implementations, however, are usuall…
-
Hello,
I am working on Gene Regulatory analysis using SCENIC as it has an option to make custom database. Since you and your other colleagues have made the software, I was hoping if you could help …
-
Hi,
I am getting no results when i runHomer.
I add pmat to my snapATAC file in R.
the peak files (bed) added to the .snap file are in the format
chr1 102949 103224
I also tried with bed file…
-
Hello,
Thank you for the fantastic tool that you have provided to perform the denovo motif search.
I think I have found a bug in the .occurence file outputted from the denovo motif search. Acc…
-
This is hard for illumina. For nanopore I guess it is possible to only take the first 200 base pairs from either end, rather than the entire sequence.
Currently most of the overrepresented sequences…
-
Hi
Congratulations on impressive and hugely useful work - both the ProBound model and MotifCentral database!
I am trying to understand how exactly the relative affinities for new sequences are c…
-
Hello --
I've been trying to run REforge on your example data, but I keep running into the same error:
WARNING:root:Error in score_sequence_with_stubb: Command 'stubb_noPseudoCount TACCCACACGTACTT…