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As the title says, I test --pre-trim-polyx or --post-trim-polyx for my PE read files, but unfortunately, polyA still remains in my R2 file.
The command I tested:
```
adapterremoval3 --pre-trim-poly…
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The following diagram: https://ay2223s1-cs2103t-t15-3.github.io/tp/images/AddSequenceDiagram.png has very low resolution, making it difficult to see the details.
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after discussing with @robyngit, we determined that it would really be necessary to filter results from data quality runs by file. This isn't necessarily MVP for the data suite but I think it's close.…
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**Note from the teaching team:** This bug was reported during the _Part II (Evaluating Documents)_ stage of the PE. **You may reject this bug if it is not related to the quality of documentation.**
Th…
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**Are you using the latest release?**
funannotate-1.8
**Describe the bug**
I am trying to train funannotate with a set of mRNA fastq data downloaded from SRA with the following command:
fastq-d…
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Hello,
I tried using the package for ASAP-Seq protocol, specifically for ADT and HTO tags. However every time I was running into issue which suggest insufficienct memory:
Example of the error:
…
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### Environment Details
- SDV version: 1.16.1
- Python version: 3.8.19
- Operating System: Ubuntu 22.04.4 LTS (GNU/Linux 5.15.0-119-generic x86_64)
- GPU: Tesla V100-SXM2-32GB-LS
### Error De…
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I'd like to contribute a change to add new IQMs for vNav sequence motion numbers.
[vNav sequences](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3320676/) provide motion information for structural s…
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**Snakemake version**
snakemake v7.18.2
snakemake-wrapper-utils v0.5.0
**Describe the bug**
When using the TrimmomaticPE wrapper (v1.19.2; `v1.19.2/bio/trimmomatic/pe`), I noticed an issue with …
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Offline discussion with @tgbugs and @lzehl about the general organization of pulse sequences: Start problem is that T1 and T2 are, in the physical sense not pulse sequences (e.g., https://radiopaedia.…