-
Hi I am Upasana
I have 200 genome of anopheles sequenced at 30X
I have a list of single copy orthologs that I have generated using proteomes of two reference genomes in Orthofinder. This gave me ar…
-
My project will analyze _Salmonella enterica_ subsp. _enterica_ serovar _Enteritidis_ (_S. enteritidis_) genomes from a variety of international locations. I think the paper given below would be a goo…
-
Hello,
Is there any public dataset or website where one can download an already pre-computed mean_coverage.txt file? I have a very small dataset for which I'm trying to compute CNVs.
Thank you
-
Thanks for the nice tool! Is it possible for this tool run against the customed microbial genomes?
-
Hello,
You had helped me get this running previously and I since adapted whole genome read detection for single transcript detection which generated some novel insights that will soon be published.…
-
Although bio-miga/miga#87 was fixed, the dataset does not show up as a query dataset where I would expect it.
when i run
```
miga add -P test/ -D Test_Xanthomonas_hortorum_pv_pelargonii_query2 \…
-
Aim for comparable Garki scenario using Co-transmission model and FPG model with comparable analysis of genetic feature
-
## Context
This is the case when the same organism is sequenced multiple times, then there has to be a way to capture the information. Once we have the information we will be able to figure out which…
-
Dear shujun,
First of all apologize for my bad English. I have sequenced dozens species, these species belong to the same genus (eg. wild, cultivars, landrances), and I will construct a pan-genome. S…
-
Hi, I am currently running Kipoi APARENT.
The provided example VCF file contains 15,077 variants, but the output only has 416 predictions for delta_logit_distal_prop and delta_logit_proximal_prop. …