-
Hello fritzsedlazeck,
Thank you for this wonderful tool! I actually noticed that SURVIVOR doesn’t convert VCF to BEDPE start position correctly (i.e start position remains as 1 based rather than 0 …
-
Hi,
I am using Lumpy to find structural variants. While reading paper I came across using 1000 genome SVs as a priors to use with Lumpy. I was trying to understand more about how to use priors with lu…
-
Hi
Why is the gene closest to it on the left side not ZNF384, but RP11-1038A11.1?The location is: 12:6800414
![image](https://github.com/lgmgeo/AnnotSV/assets/160692531/a3b1c7f7-99ab-4ec0-aa6d-eb…
-
Hello, thanks very much for your previous answers. And I have another small question recently. Why gridss can not generate the genotypes of SVs (i.e., 0/1,1/1), and some other SV callers can give the …
-
Thank you for your excellent work!
I wonder if I run the haphic pipeline correctly. I have a genome of 4G (a diploid, 2n=26), and I just use the p_ctg.fa file from hifiasm and HiC data. When I run…
-
Creating this ticket per the discussion in #632.
For calling SVs from long read sequence, these are mainly detected by reads having supplementary alignments. It would be very useful to be able to s…
-
https://groups.google.com/d/msg/pystatsmodels/YztBPF9gr7M/81rw0hp0GDMJ
http://datascience.stackexchange.com/questions/8266/is-there-a-library-that-would-perform-segmented-linear-regression-in-python
…
-
hi,
i am using *axLazyElementDynamic to lazy load dynamic component.
very similar to the dynamic demo in the docs. the configuration is an Array retrieved from the server.
the problem i am facin…
-
Hi,
I'm trying to run McClintock for a large number of isolates. I submitted the first batch of 20 and they all failed with the same error message with malformed bed entries:
```
PROCESSING …
-
Running svaba on Terra/Firecloud, we have troubles at this step of `svaba run` for >30X Tumor/Normal WGS (from the logs)
```
...vcf - reading in the breakpoints file
...vcf sizeof empty VCFEntryP…