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There are a few issues with the way we have taxonomy table currently in PathoStat. Hope this can start a discussion about how we want to handle these things.
- **Should be able to get the ranks withou…
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for charcoal, there is some interesting logic encoded [here](https://github.com/dib-lab/charcoal/blob/c7fd19205e92461bb5ee09735e05d107e35a1779/charcoal/utils.py#L198) in utils.py --
```
taxlis…
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Dear authors,
I'm trying to use your tool to perform some MAGs taxonomic classification. I was trying to adapt the information provided in the github README of this project for the execution but …
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The WIMP workflow adds an additional group Analyses/Classification_000 - this stores the taxonomic profile information. Add support to extract via poretools.
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### Description of feature
The current stop-codon detection in ampliseq could be improved and supplemented with frame-shift detection by implementing [MACSE](https://doi.org/10.1093/molbev/msy159). T…
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An important part of the name usage matching, apart from plain name matching, is to compare the classification of matched candidates to disambiguate homonyms. As classifications can be very different …
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- Added by [Archilegt](http://myriatrix.myspecies.info/user/2)
- Scratchpad: [Myriatrix](http://myriatrix.myspecies.info)
### Description:
Import, taxonomic classification, there is no option for im…
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Original Issue reported by Project Member Reported by john.t...@austmus.gov.au,
Jul 9, 2012 - https://code.google.com/p/ala-bie/issues/detail?id=374
Project Member Reported by john.tann@austmus…
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Would it be possible to annotate nodes with taxonomy (higher-level names that are not reflected in the terminal names). Almost all phylogenies take a what we call 'exemplar approach' (Prendini 2001, h…
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Hi,
Thanks for this tool. I have a small question after using it. Is it possible to generate a sankey diagram at different taxonomic classification levels? The default is to draw at the Phylum lev…