-
Hello! To use the Prediction evaluation module, you must pass trueLabelFile to the labels input. Can you please tell me how to get these labels?
-
Hello!
In TEanno.gff3, TE_00000019 actually has multi-locus repeats on each chromosome, so do these TE_00000019 need to be merged and spliced again? Or do these transposons already contain the full L…
-
Adapter trimming
Running Collapse
Reading from file ./trimmed/HI.3965.005.RPI1.1-1_R1.fastq.gz
Processing reads
Original number of reads: 16651798
collapsed number of reads: 732060
Mapping to hg…
frimz updated
5 years ago
-
High abundance kmers align to a Haplochromine instance of a [fugu LINE element sequence](http://www.ncbi.nlm.nih.gov/nucleotide/338899919) (GBID [AB601475.1](http://www.ncbi.nlm.nih.gov/pubmed/1002305…
-
I'm trying to predict the m6A site of Arabidopsis DRS data with nanom6A, but I received the following message while performing "predict_sites". ! What files should I check for? or any other informatio…
-
Dear developer
Thank you for designing such a great software, which is excellent in some aspects of performance and running time!
When I performed TE detection on an animal genome of about ~2.5G…
-
Dear Evan,
I am really excited with getting Tephra running, it seems to be a beautiful piece of software. I had some issues I'd like to solve, though. I am putting them here so everyone can see, bu…
-
Dear the authors:
Thanks for developing such an useful software. I have an question that if the reasonaTE uses TransposonDB to annotate the TEs or only the RFSB uses the TransposonDB?
Thanks aga…
-
Dear @alexdobin
It's a great piece of software and we achieved our assumptions.
Now there is a problem that our manuscript was asked a question by the reviewers. Questions are as follows:
"L48…
-
In ages file I see things like:
`RLC_family0_exemplar`
And in the fasta files, I got
```
RLG_singleton_family1616_LTR_12347_chr07_42270149_42278820
RLC_singleton_family1616_TRIM_2991_chr04_1387…