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### Description of feature
Hello,
I am attempting to reconstruct a function from R to Python that can differentiate between malignant and benign tumor cells recently, and it seems that the infercn…
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Dear sciCNV developers,
I have 2 questions about sciCNV regarding control cell selection and multiple baseline feature.
Firstly, I would like to ask if gene expression data from control cells of…
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Hello, thanks for this tool.
I have a couple of questions and I would appreciate some guidance on how to move forward.
(1) I ran one sample in CopyKat. The output CNAmatrix looks something like th…
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- [ ] a. Correlation of RAS pathway signature gene expression with mesenchymal exposure values of primary tumors.
- [ ] b. Correlation of JUN/FOS target gene expression mesenchymal exposure values of…
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Dear authors,
currently I want to compare & test different methods for CNV-calling on spatial 10x slides. Could you please provide a simple vignette for 10x data and seurat without any additional d…
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After installing pyATE as for documentation, if I run the examples in the documentation I get different and worst results.
Running:
```
from pyate import combo_basic
# source: https://www.ncbi…
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'mediastinal neurilemmoma' (DOID:6175), which is a schwann cell tumor, currently has the children:
- 'mediastinal granular cell myoblastoma' (DOID:5046)
- 'mediastinum leiomyoma' (DOID:5123)
Both…
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Hi InSituType team,
We'd like to use your method for supervised prediction of our cosmx data. I noticed that the reference matrix is not from your precious annotated NSCLC but something like a bulk…
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Dear Laffy,
I read your new [glioblastoma paper](https://www.cell.com/cell/abstract/S0092-8674(19)30687-7) and would like to try your methods on our single-cell RNA-seq data.
But I have the foll…
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Compare transcriptomes of B-ALL cells from our RNA-seq to the transcriptomes from the paper:
`Single-cell functional genomics reveals determinants of sensitivity and resistance to natural killer cells…