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Hi,
I hope functions around eigengenes in the WGCNA section.
If we can download at least the eigengenes matrix, it will be very helpful.
A heatmap representing correlation with a design matrix an…
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**Issue by svlandeg**
_Thu Mar 27 13:46:10 2014_
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Applicable to both the osmotic and the TF use-cases: define co-expressed genes within a certain condition!
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## Background
Initially we had a discussion that sprung up on https://github.com/AlexsLemonade/refinebio-examples/pull/353#issuecomment-728277824 (the first draft for a first "advanced topic").
T…
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Hi Sam,
I wonder if there is a way to export the networks to Metascape so I can annotate the network with other information like protein-protein interaction or gene ontology association.
Thank you!
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尊敬的老师您好:
我尝试用您给出的 3Mcor R 代码进行代谢组与 16S WGCNA 相关性分析,但是代码中只有跟表型关联筛选出显著模块后才能进行后续的代谢组与 16S 关联,请问如何解决?谢谢!
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老师,在做WGCNA时候有两个问题需要请教您,1:导出cytoscape文件做可视化的时候,很大,选择哪些基因做可视化呢,是根据weight值么?2:这样做的话,得到的结果和筛选的top25hub基因不太一致,怎么取舍?
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![image](https://user-images.githubusercontent.com/9219423/38264313-47cde914-377b-11e8-96f8-36c86a76ffba.png)
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Firstly, thanks so much for developing such a useful tool. It has been immensely helpful in my research. However, I've encountered a couple of challenges that I hope you could assist me with:
1. I …
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### Description
To create a cython version of `biweight_midcorrelation` because the current implementation is very slow. For example, `pandas` has `nancorr` and `nancorr_spearman…
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Hello,
Is there a way to evaluate how stable the modules are? In the projection section you discussed how modules created from one set may not apply to another set. Here I'm more interested in the …