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Hi Developers,
How to set the Varsim parameters to simulate a single-end file of shallow whole-genome sequencing (0.5x) given mean fragment size of 167 bp?
Best
Pitithat
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Hi,
If there is only one individual, how depth I need to sequence (whole genome sequencing) if I want to get reliability results using magic, 5X, 10X, 20X or 30X ?
Best,
Kun
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hey @srubinacci,
I was using GLIMPSE2 for imputing my low coverage whole genome sequencing data. I downloaded the last version of the GLIMPSE2 code using: git clone https://github.com/odelaneau/glim…
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ESKAPE pathogens found in https://www.nature.com/articles/s41597-022-01463-7
Datasets for benchmarking antimicrobial resistance genes in bacterial metagenomic and whole genome sequencing
https:/…
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Hi, do you think that this method could be applied to high coverage >80x whole genome sequencing? Also will this only identify fusions from simple rearrangements or also from multi-breakpoint events?
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Hello,
Do you think it is possible to use LDna on a large number of SNPs (>1 000 000) obtained through Whole-genome sequencing? If so what would you recommend to build the LD matrix?
Thanks
Claire
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Dear respected author,
Hello! I am thrilled and deeply inspired after reading your work, as I am currently seeking methods to distinguish diploid and tetraploid cells in plant scRNA-seq data. I w…
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- [x] Neisseria gonorrhea
- [x] Bordetella hinzi
- [x] Bordetella avium
- [x] Mycobacterium tuberculosis
- [x] Salmonella Typhi
- [x] Mycoplasma genitalium
- [x] Pseudomonas aeruginosa
- [x] Ra…
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Hello,
As discussed by email, I would like to add the results of the following papers to the database. Could you please support me in this regards? Thanks.
1) A Genome-wide Association Study of …
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From the Quarto "Selecting GVCFs for Aggregation" page of the MVP Whole Genome Sequencing Data Release 2 book:
```
Metric: Average per base sequence quality
Has value: 118711
Passed: 118531
Fai…