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Hi,
Thanks for developing this useful tool! I’m eager to apply it in our research.
I am encountering what I believe is an out of memory crash when processing a large digital pathology whole slide i…
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Hello,
I am facing some problems hndling the PANDA dataset. How did you process the PANDA dataset? I see that in the splits section of the code for PANDA data train, val and test set have image_fn …
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**What I need help with / What I was wondering**
I want to load a dataset containing these
w…
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I use
Tensorflow version is 2.4.1
training config:
RESULT_DIR: "result_wholeslide_1x"
MODEL_PATH: "${RESULT_DIR}/model.h5"
LOAD_MODEL_BEFORE_TRAIN: False
CONFIG_RECORD_PATH: "${RESULT_DIR}/confi…
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Hello,
Did you apply the survival prediction on slide level or patient level? If it is on patient level can you please let me know how did you convert the slide level prediction to patient level pr…
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### Summary
Hi, I am currently working with the PPMI dataset (open access https://www.ppmi-info.org/ ), and I got this error when processing subject 3544 with compute canada (heudiconv 0.8.0 si…
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## 2. New data formats
The most energy and creativity for machine learning projects is on organizing the data, optimizing the data structures, and extracting features. That being said, the current …
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**Describe the bug**
A clear and concise description of what the bug is.
We believe this issue is similar to https://github.com/Dana-Farber-AIOS/pathml/issues/135#issue-926470357
There seems to…
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您好
CTransPath 论文中，在“Table 7. Results of weakly-supervised classification on three public datasets.”中有提到在CAMELYON16数据集上，保持数据集默认的划分，CLAM-SB 的分类结果acc=0.837, auc=0.873；然而，在CLAM的论文中（“Data-efficient and …
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### What happened + What you expected to happen
When using `ray.data.from_numpy()` with large matrix, I got the following error.
`ValueError: Per-column arrays must each be 1-dimensional
`
Full …