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I re-ran the test-script a few times. There are still fragments that cannot be aligned with the reference sequence. Since we changed nothing but the header information but left the sequences untouched…
VSack updated
6 years ago
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```
3.6.5 (default, Apr 1 2018, 05:46:30)
[GCC 7.3.0]
CPython
Linux-4.15.0-23-gen…
kblin updated
6 years ago
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I've been doing plasmid-enriched MinION read assemblies and I understand that Canu causes a terminal repeat, which I can easily cut out.
However, I've been having problems with non-terminal direct …
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/databio/COCOA
Confirm the following by editing ea…
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I would like to plot a Genebank file not in the linear, but in the circular view.
Could you please provide code for that?
Thanks in advance.
ghost updated
6 years ago
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Hi,
I have been troubleshooting a few samples that seem to be freezing up and running indefinitely during the assembly process. I am using raw reads, with adaptors removed, and have tried a few km…
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I have found that in database version 71 that pham 6635 is crashing starterator. it has the following genes all of which begin at base 1:
Members of Pham 6635
```
Gene Phage Cluste…
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Does anyone have requests for new figures or updates to existing figures? We have a graphic artist available to help, so please chime in if you have anything in mind!
### Expected behavior
Figure…
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@sdhutchins needs to simplify this and integrate IQtree
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Hi,
make fails with following errors
I have tried v 2.2.0 and 2.3.0 and both result in the same errors.
I don't understand the errors, complete logs are attached at the end of the post.
Could…