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SEA-PHAGES
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starterator
Released Stable version of Starterator for SEA phages; Note does not work with current version of phamerator database! For version compatible with current phamerator database, see this repo: cdshaffer/starterator
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Scheme ten
#43
cdshaffer
closed
2 years ago
0
DNA master udpate to Genome profile breaks starterator
#42
cdshaffer
closed
3 years ago
1
wierd double tracks
#41
cdshaffer
closed
3 years ago
2
Schema7
#40
cdshaffer
closed
4 years ago
1
Versionupdate1.2
#39
cdshaffer
closed
4 years ago
0
Versionupdate1.2
#38
cdshaffer
closed
4 years ago
0
profile phage do not have assigned subcluster
#37
cdshaffer
opened
5 years ago
2
branch sortbycluster crashes on phage Cota
#36
cdshaffer
closed
5 years ago
1
Main candidate
#35
cdshaffer
closed
6 years ago
1
check and incorporate changes submitted to old eddis/starterator
#34
cdshaffer
opened
6 years ago
0
Main candidate from shaffer
#33
cdshaffer
closed
6 years ago
2
idea: sort pham tracks by time, most recent at top, oldest at bottom
#32
cdshaffer
closed
6 years ago
1
test of pull request
#31
cdshaffer
closed
7 years ago
1
partial genes annotated as full genes
#30
cdshaffer
closed
6 years ago
1
Byphagewithbase (#25) addition of start lists by gene
#29
cdshaffer
closed
7 years ago
0
wrap around genes crashing some pham reports
#28
cdshaffer
opened
7 years ago
0
change report to add % conserved, % called
#27
cdshaffer
closed
7 years ago
3
add track Number to title on each track
#26
cdshaffer
closed
7 years ago
2
Byphagewithbase
#25
cdshaffer
closed
7 years ago
0
Starterator Update, new report format, better recognition of tracks, bug fixes
#24
cdshaffer
closed
7 years ago
0
Anotcount
#23
cdshaffer
closed
7 years ago
1
Pham report updates to text
#22
cdshaffer
closed
7 years ago
0
switch determination of draft status to phage table field
#21
cdshaffer
closed
6 years ago
3
pham 24190 crashes starterator
#20
cdshaffer
closed
6 years ago
4
tracks with no start annotated, missing start 1 in graphics of Track
#19
cdshaffer
closed
6 years ago
3
minor issue with blast database creation
#18
cdshaffer
opened
8 years ago
0
Beta
#17
cdshaffer
closed
8 years ago
1
Alpha
#16
cdshaffer
closed
8 years ago
0
Alpha
#15
cdshaffer
closed
8 years ago
0
tracks with no starts little pink
#14
cdshaffer
closed
6 years ago
5
update phamgene terminal reverse gene
#13
cdshaffer
closed
8 years ago
0
Update phamgene.py
#12
cdshaffer
closed
8 years ago
0
update track binning
#11
cdshaffer
closed
8 years ago
0
updated printing message
#10
cdshaffer
closed
8 years ago
0
updating printing statements
#9
cdshaffer
closed
8 years ago
0
Printing
#8
cdshaffer
closed
8 years ago
0
move these into beta version
#7
cdshaffer
closed
8 years ago
0
my master for reference
#6
cdshaffer
closed
8 years ago
0
Pecaan file
#5
cdshaffer
closed
8 years ago
0
pull me please
#4
cdshaffer
closed
8 years ago
0
No blue4 draft
#3
cdshaffer
closed
8 years ago
0
Filter spanning genes
#2
cdshaffer
closed
8 years ago
0
Default actino
#1
cdshaffer
closed
8 years ago
0