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The goal is to develop an ETL script to convert NMDC submissions to NCBI submissions using version 6.0 MIxS packages. We will start by developing support for the following packages:
- soil
- water
- h…
aclum updated
2 months ago
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DataHarmonizer groups columns into sections. We should review:
- Appearance (determined mostly by the [Sections_order tab in Soil-NMDC-Template_Compiled](https://docs.google.com/spreadsheets/d/1pSm…
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@pieterprovoost
Some non-redundant DwC properties can be of high value for ODIS-level discovery, but @pieterprovoost notes that a full embedding of all DwC fields is prohibitive (GB sized JSON-LD wo…
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Possible alternative to #780
@pkalita-lbl @mcovalt what do you think of auto-populating some DH columns?
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This came up at the Board meeting. How will we handle retirement of existing terms. Probably similar to ontologies for obsolete terms. Need a way to redirect to replacement term. Sometimes replacement…
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**Add EMSL and JGI terms ASAP too**
Related work
- See also #20
- `make all` already comes close to this but is too inclusive (and the workflow is a mess)
- See also [modular_gd.py](modular_gd.…
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1 - **instrument_model** can be captured with OBI device terms
Tasks:
--find existing terms for devices
--identify devices for which there are no OBI terms
--for datasets without platform_ids, s…
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- `depth2` is being deprecated in https://github.com/microbiomedata/nmdc-schema/blob/issue-486-data-to-7-0 (which will actually result in a new version of the schema, greater than 7.0.0)
- the releas…
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According to MIxS, these terms should be required:
- Geographic location
- Geographic location (latitude and longitude)
In the interface, they currently are not highlighted yellow nor required (v…