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/lustre/beagle/CompBIO/biosal-THOR
biosal-405-256-nodes-13 is queued (2775124)
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/gpfs/mira-fs1/projects/CompBIO/Projects/biosal-tests
biosal-Iowa-23 is queued (300250)
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For the first cut, we are assuming that each read can only exist once in a transcript. Thus, for every equivalence class you have a count, instead of having a count for each equivalence class => trans…
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Summary:
512x16 done
1024x16 done
1536x16 to do
2048x16 to do done **spate-569-2048x16-2** ~~(there is a memory leak in the arc computation it seems)~~
Do all 4 of them with the same biosal commit !…
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http://code.google.com/p/pami-examples/
code will go in:
[boisvert@cetuslac1 biosal]$ find engine/thorium/transport/pami
engine/thorium/transport/pami
engine/thorium/transport/pami/pami_active_buffe…
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Hi Brad,
I combined FreeBayes and MuTect in paired variant calling, and the run was fine but only the FreeBayes vcf ended up being copied into the final folder. Any ideas what might be wrong?
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Ray Cloud Browser shows that the weak part of bubbles are valid seeds.
With a k-mer length of , both part of the bubble have a length of 2k-1 for mismatch errors, and 2k-1-1 or 2k-1+1 for indels. But…
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Hi,
I am using a frozen binary MetAMOS with all BLAST DBs. But when I test runPipeline command, an error "Could not import psutil, disabling." was reported.
Now, I used Python 2.7.3 and tried to ins…
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All 512 processes but these finished:
Ray-Scalability-512-2012-10-07.4.1.111 [DEBUG] sending RAY_MPI_TAG_GET_READ_MARKERS source: 111 destination: 411
Ray-Scalability-512-2012-10-07.4.1.224 Position…