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Dear Shenwei,
Thank you very much for providing a good tool, I am trying to adjust the output table as desired according to KMCP format.
- Currently I use search with all the databases you provide…
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below is taken from the example html code in the dev branch, and my own.
i don't see a difference in my JSON or the example JSON... mine is valid and comes from couchDB.
the example JSON produces the…
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BP says:
> I did a taxon validation thing and got the attached results at the first
> pass.
>
> 3- When I follow one of the "validate by hand" links, I see a list
> like this
>…
ghost updated
8 years ago
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Hi
I have a question on outputting custom column headers. This [wiki page](https://github.com/soedinglab/mmseqs2/wiki#custom-alignment-format-with-convertalis) states:
`Column headers can be add…
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Hi,
I have some quesionts about the "subject super kindoms " when specify the -outfmt "6 ... sskingdoms", the following are the type of sskingdoms in my output, what's the difference between 0 and N/…
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Hello everyone. I've recently started using Centrifuge, and I've been able to create a viral index and use it with my metagenomic data. However, when I'm trying to build a bacteria index (bac), the pr…
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Hi all,
I built a database but failed to shrink it into a mini one. The error messages are:
```
Use of uninitialized value $shrink_block_offset in exec at kraken-master/scripts/kraken-build line 2…
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Hi,
I want to update the database to get more accurate results. Can I update it?
Thanks.
wfgui updated
2 years ago
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Hello everyone.
I tried to establish the customized kraken2 database (archaea, bacteria, and fungi), **the "kraken2-build --build" step is stagnating for days.**
my commands as follow:
k…