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we have compiled the VirHostMatcher and ran the test. We get an out file running the test, but when we use our own data it runs and fails to produce and out file. We don't have an annotation file for…
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We are trying to view contig bins in anvio with "-C CONCOCT", but getting this message:
```
(/slipstream/home/bethanie/.conda/envs/anvio) bethanie@moleculardb:~/anvio_June14_2017$ anvi-interactive…
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Dear developers,
Thank you for developing and maintaining
this great software.
I found in two different datasets that
an AMR gene was missing in canu assembly
of a bacterial species, but p…
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Basically I want to use being circular as a criteria for considering something as being a potentially viral contig as well if it passes virsorter decontamination mode. Perhaps is there info in one of …
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I am setting up this `viral-ngs` package to try out. However, it would be nice to hear some experiences or opinions about using it for data of human pathogenic virus sequenced by an ion torrent proton…
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Dear all,
I tried to submit a canu assembly on a SLURM grid enviroment. However, it was unsuccesful. In fact I got the following:
```
Please panic. canu failed, and it shouldn't have.
Stack tr…
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Following the approach of [Shinzato et al. (2014)](dx.doi.org/10.1371/journal.pone.0085182) (see Table S3), I've blasted the Pdam scaffolds against both the *Acropora digitifera* and *Symbiodinium min…
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Is there a way to adjust the learning rate parameter? Also, what is the default learning rate parameter? I checked the publication but I didn't see it in there.
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I do see a flash of a loading bar in 2.4 - but no authentication dialog like I get from 2.3.92
here are some tcpdump captures:
not working (2.4.5, 2.4.0)
```
08:54:58.559611 IP6 localhost.54271 …
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Hi Meren,
How does anvi-summarize choose the completeness value to report in the index.html file?
It does a pretty good job with the bins that are fairly complete with a certain level of redundancy,…