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Thanks for developing this use of PICRUSt! Your idea of dynamically retraining based on dada2 reads is a great fit for any program that does not use 'close-ref' OTUs. I think this method could be wild…
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I used matR a couple years ago with no problem. I'm now trying to use it again to access another MG-Rast dataset, and I'm getting a peculiar error when I'm trying to set up my authorization key. I've …
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### Description of bug
I am analyzing metagenomic data from the CAMI challenge, but I encountered some errors when running SPAdes. I've reviewed similar issues, but I’m still a bit confused and would…
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Hello! Wondering if this is the right place to post issues or on sourceforge. We are trying to get dmtcp installed on our cluster here at NERSC and I am running into an odd issue.
## Issue
dmtcp …
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Hi Kangxiongbin,
Thank you for developing this impressive software. Utilizing both short and long reads for metagenomic assembly is a fantastic approach! However, I encountered some issues while us…
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Hi Diener,
I tried to run qiime micom build and had the error in below:
version info: …
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Hi,
I was using Bracken to re-estimate reads at Class level for Eukaryotes. Now, there is a certain fish Order that I don't want included in the general fish Class, because it's the Order of my hos…
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Hi there, thanks again for writing this useful tool!
I can run the CGC Finder without a problem with just fna files as input. However, when I tried providing my own protein sequences and the associ…
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This is a really ugly file... apologies in advance.
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Hello, recently, I tried calculating beta diversity using the `skbio.diversity.beta_diversity`. First, I hvae confirmed that the version of SciPy and scikit-bio is 1.14.1 and 0.6.2, repectively. Secon…