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The style of these 3 pages needs to be fixed to mirror what currently in production.
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Hello, I have tried SplAdder and got error messages:
# gff3 file from ensembl (Drosophila_melanogaster.BDGP6.84.chr.gff3)
$ python spladder.py -a ../../Drosophila_melanogaster/ensembl/Drosophila_mela…
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eg differences:
e.coli
E.coli
E. coli
e. coli
E. Coli
`E. coli`
etc
There are others too. I'll ask Sian/Nathan for the database info so we in editorial and production can start working out the exten…
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@rachellyne Can you help me find new fasta files?
Specifically look at the directory we've been using for the past few years:
ftp://ftp.flybase.net/genomes/Drosophila_willistoni/dwil_r1.05_FB201…
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Neither the `[fastq_strand_indexes]` nor the `[10xgenomics_transcriptomes]` sections in `settings.ini` are unable to handle cases where the organism name contains spaces.
For example:
[10xge…
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Hi there,
I ran the R code. At the step,
library(RcisTarget)
motifRankings
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Storing the FlyBase genes in the Canto database is useful for testing, but longer term we should read the details from Chado.
I'm hoping this will work without code changes. I'm downloading a co…
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**TL;DR:** There may be an experiment that is highly relevant to our mission that has `no downloadable samples`, how can users let us know that they would like those data?
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### Context
Dur…
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Hi,
This command `createIndices --local -j 8 --genomeURL /scratch/waterhouse_team/benth/dbg2olc-40x/salsa/scaffolds_FINAL.fasta -o snakePipes-output --tempdir snakePipes-tmp dbg2olc40x` caused:
``…
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Hi,
It's my first time using Kallisto and I get this warning:
Warning: 34964 transcripts were defined in GTF file, but not in the index
When I run:
kallisto quant -i ~/kallisto_index/bdgp6.…