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Hello!
I am relatively new to metagenomics and I've been using Kraken2 for my analysis. I was wondering if Kraken2 has some sort of way of removing DNA reads that do not belong to the sample analyz…
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Hi Matt,
I need a help to comprehend your pipeline. I don't know how to set parameter $taxaJson ,Can you give me a example?
Thanks
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Collect functions from the main module that need to be implemented in a shared library version of IQTREE2
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Hello Emese,
Firstly thank you for creating this repository, it is a really nice simple-to-use set of functions for COI databases. I'd like to ask your opinion on using it for making databases for …
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Hi,
is it possible to get an updated database at some point in the near future?
Or is there a way how to update/create a database by ourselves?
Thanks in advance :)
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I was predicting the structure of a complex using the CoLab (AlphaFold2) by uploading unpaired alignments of the monomers. I encountered the error (**List index out of range**) at the Prediction step …
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I am trying to select the top 1% of ASVs in relative abundance to do a barplot. Could somebody help me?. I tried this code:
obj
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I will appreciate if you can help me with a couple of questions regarding
MMseqs2. I've been running it using both approaches, for the alignment against
sequence dbs (mmseq search -> convertalis) an…
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### Description of feature
Add COPO to the set of sources queried by the genome metadata subworkflow
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There are a number of fields in the GROW dataset that need to be mapped to fields in the NMDC schema, so that the data can be effectively translated and a JSON can be produced.
| GROW …