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Dear community
I am a new user for OpenMS and TOPPAS.
My goal is to use Sage (so the SageAdapter) to re-analyse proteomics data to find PTMs.
I am struggeling in setting up the pathway. I tried wi…
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Axel and me created an initial template for streamlit deployment.
I think we are at a point to test if someone can deploy it on ibmidocker
https://github.com/OpenMS/streamlit-template/pull/4
Steps n…
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Hello everyone,
I'm using OpenSwath for small molecule analysis. When generating results in OpenSwath as OSW and TSV files, I've noticed that they do not contain exactly the same content. I can con…
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I'm getting a persistent warning about OPENMS_DATA_PATH when I use ms2rescore.feature_generators.ms2pip.MS2PIPFeatureGenerator from a Python script.
Here's how I create the environment:
```
C:\p…
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Hello,
I am Running Dia-NN 1.8 through FragPipe and Dia-NN cannot load most of the files I am providing. I have researched previous problems, and it mostly occurs when the reader for raw files is …
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- Describe the issue or question:
Hi fragpipe developer, I am using DIA_SpecLib_Quant flow to analyse the data and have encountered some issues, here is my workflow file along with the run logs.
…
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### Description of the bug
I have problems using MHCquant with multiple variable modifications.
The whole pipeline works when not specifying any modifciations.
With multiple modifcations, the pip…
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Hello! I was hoping we could discuss why the lookup of a modification is using the 'NT' name when an unimod accession is available. It sincerely feels like the human readable name should be a fallback…
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Hi SIRIUS team,
I tried importing mzML/mzXML files containing MS1/MS2 information into Sirius (4.9.3), but only a small part of the precursors with their respective MS2 information show up in Siriu…
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works upon streamlit 1.29