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Hi Eric,
question about --filter-bed for Tumor-normal-enrichment. I was using the filter13.bed file to filter the centromere and all was fine and dandy.. Got results.
I created a bed (0 based …
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**User story**
I'd like to be able to explore the composition of cell types within a subregion of my dataset, say by manually selecting a region in a scatterplot and then viewing an obsSetSizes plot …
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hi,
I want to download the Cairo and PyCairo package, but i canot open the link:https://gist.github.com/Niknafs/6b50d9df9d5396a2e92e, how to solve it?
thank you!
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We usually filter variants against a panel of normal samples. This can be done post variant calling by genotyping detected variants in this panel and call anything at a certain threshold in a minimum …
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Hi to you ,
I am new to MSI and MANTIS .
I have had a BED file with recording MS loci , but I wanna reduce the number of this MS loci for the bigger accuracy of MANTIS ,because MANTIS would be …
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# This is an umbrella ticket for the alignment of EFO measurement/trait terms with OBA terms
The focus of this ticket is the table [oba-efo-unreviewed.dosdp.tsv](https://github.com/obophenotype/bio-a…
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Can I used for tumor-only bulk mRNA-seq?
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### Description of feature
The DNPM KDS draft includes a set of clinically relevant scores which can be calculated and derived from data generated during alignment and variant calling. As a long-term…
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I've spent the last two weeks trying to get Weaver to run on COLO829 and I'm still failing. How exactly is a matched normal used by Weaver?
I have encountered the following issues in my attempts …