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now that we have simultaneous contamination output/analysis across different levels per #128 #130, it would be nice to get some summaries of which taxa are most often contaminated at what levels, etc.…
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Hi There,
I am trying to submit TPA metagenomic assemblies using `webin-cli-3.4.0.jar`. Most of my files are being validated just fine but for a small proportion of files, I get the following ambig…
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## Tasks
1. all PCGs BLAST all-vs-all search - diamond.py
2. gene sets construction
3. real alignments to respective sample contigs specific to gene coordinates
4. module detection of coverage-c…
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Hi there,
I would like to use `kmtricks`, to use `HowDeSBT` as [this example](https://github.com/tlemane/kmtricks/wiki/Index-example) suggests that there is a convenient wrapper using the newest in…
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Hi,
This looks super-cool, but do you plan to publish any instructions on how to use it also? :)
Another small question. You state in your paper for PROTAX-GPU that...
> [...] before computing …
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### Description of feature
I don't have a lot of experience with all the tools so I can only speak for kraken2 and Bracken:
### kraken2
* It can be disastrous to not set the `--confidence` para…
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**Is your feature request related to a problem? Please describe.**
Absolutely. Compositional data analysis [CoDA] is large in fields such as bioinformatics, geology, and economics.
> In statist…
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Hi,
Thanks for the gtdb-taxdump. I´m working on Silva , is there any available tax dump ?
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I have gotten the example data to run with InteMAP just fine. However now I am trying to run two of my own files before scaling up to my full data set. I have metagenomics samples from an Illumina his…
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When I was running VirSorter, it didn't report any error. But when the program finished, one result file, namely VIRSorter_global-phage-signal.csv hadn't any content. Can someone help me?