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Currently, the `Dataset` type is poorly specified, and included in `reads.avdl`. We have some comments like
```
TODO: Reads and variants both want to have datasets. Are they the same object?
```
Th…
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Once the first stable release is reached.
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Trying ftp://ftp.sra.ebi.ac.uk/vol1/ERA172/ERA172924/bam/NA12877_S1.bam with 1.1.8 quip causes a core dump.
I have a tiny 30 line SAM file version of this BAM (it's just the header and 2 reads) and i…
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Which format should FASTQ files be in. I know there are at least some ways to allow for line breaks or not (the latter is more restricted and easier to parse). There should be a reference to every fil…
fungs updated
9 years ago
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What request to make?
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Release: 1.5rc1 Frozen Binary (February 18th)
Arch: x86_64
OS: Centos 6.5
Starting Task = findscaffoldorfs.FINDSCAFFOLDORFS
**\* metAMOS running command: /tmp/_MEIkUbeTQ/Utilities/cpp/Linux-x86_64/Fr…
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Consider a researcher who writes a script against the GA4GH APIs, accesses data and publishes the results. The current APIs do not guarantee that subsequent researchers will get the same result when r…
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All of our Avro files are namespaced under ga4gh, so a read alignment is currently `org.ga4gh.GAReadAlignment`
So the GA seems a little redundant from a packaging perspective, and is making all of th…
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For a genome assembler we need an option for providing different libraries.
CAMI-challenge/docker-camibase-assembly#3
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Hi. Thanks for putting the SURPI code out, and for making the Amazon AMI.
I'm running the AMI on an i2.4xlarge, as recommended.
Sometime after running SURPI.sh, apparently successfully, I happened …