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Hi, I encounter the same problem as in https://github.com/facebookresearch/LAMA/issues/10.
And I found the reason why 2 examples are filtered is that the `obj_label` are `1970s` and `1990s`. And in `…
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(Edited)
Defining mutations:
GL.1 > > C26013T > A3084G, C5144T > Orf1a:A474V ( C1686T), Orf1a:P971S (C3176T), Orf1a:P1497T (C4754A), Orf1a: L2044I (C6395A) , T16974C, T17565C, C19011T, S:N148T (A220…
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Hi,
I am using distJaccard function and I am wondering about the interpretation of the results.
my input was an accessory genome presence/absence matrix (attached), where each row is one genome …
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Query: G21718C, T22928C, C25714T
Collected: 2023-04-29 and 2023-05-12
Normally I wouldn't make an issue with only 2 sequences, but since this is pretty much the xbb.1.9.1 equivalent of xbb.1.9.2…
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Hello,
I'm looking to create a pangenome using your scripts as a means to compare ggCaller against tools that were not included in your paper, but I've encountered some problems during the pangenom…
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Hi
I got this error when I try to create a core alignment
Thanks
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Hi,
As stated in the title, when I run the rarefaction module, it successfully creates the plot but does not include Heaps calculation? The kappa and the gamma parameters are all blank. Does this h…
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貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
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Hello everyone!
I got taxonomy by sourmash gather, table with md5 hash numbers
How I could use it to extract specific reads (not contigs) of one Species (or Strain) from metagenome fastq file by sou…
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**Versions**
Poppunk v2.5.0
PopPUNK (POPulation Partitioning Using Nucleotide Kmers)
(with backend: sketchlib v2.0.0
sketchlib: /opt/conda/lib/python3.9/site-packages/pp_sketchlib…
avonm updated
10 months ago