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Dear pyensembl team,
I would like to use pyensembl for the genemodel gff for human species download from NCBI.
As this is not from ensembl, I have followed the your mentioned [guide](https://git…
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We found a problem in the gff file you have as test.
* rnaseq
* test-datasets/reference/genes.gff
```
I ensembl transcript 335 649 . + . ID=YAL069W;Parent=YAL069W;geneID=YAL069W;gene_biotype=pro…
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Az merült fel bennem, hogy kell e tovább haladni a régebbi branchekkel, mint a stable, test.
Az acquia workflowba elég egy branch, de tageljük a státuszokat, így talán nincs minden branchre szükség a…
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In order to use VEP, I made an AUGUSTUS GFF annotation file. Here you can see the GFF structure for the first gene:
```
SuperScaffold AUGUSTUS gene 1 5061 0.02 - . …
eprdz updated
7 months ago
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**agat_sp_merge_annotations.pl output incompatible with cellranger**
I have two gff files I want to merge.
One is an old annotation, and the other is a new annotation I have just made using brake…
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Hello,
I am a undergrad student working with rna-seq data and I use hisat2 in my pipeline but for one of the species I am working with I only have its annotation data in gff3 format and the scripts f…
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Hi!
Lately, I experienced fragmented gene annotations in terms of two (or more) ORFs that are in close proximity and are annotated with homology to the same gene. In such cases, Prokka ads an `_n` …
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I have a naive question about your MSA methodology. Why would the aligner choose to align short segments (1000bp) before aligning again? Perhaps I am misunderstanding the parameters to abPOA.
E…
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I'm trying to build a .flux viewer that runs in a web browser so I can see what my drive is capturing. So far I've worked out that `.flux` is a sqlite datastore and that it contains gzip'd data. Using…
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Hello,
first of all, thanks for this beautiful tool!
I am having an issue with running GeneExt on some plant annotations.
Either the progress stops during 'Preflight checks' without notice, or …