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Hello,
I’ve been using hap.py to benchmark two VCF files, but I keep encountering the following warning:
[W::bcf_hdr_register_hrec] The definition of Flag "INFO/IMPORT_FAIL" is invalid, forcing Nu…
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Hello,
I've tried lumpy-sv from conda. However, it has the following error. I have NumPy, pysam, hexdump and bamkit installed. Below is the input/output. Please kindly help. Thank you!
lumpyexpr…
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Hello BPCells team
I am currently trying to install this package in a conda environment created in a linux server for which I have no sudo access. I am not very keen on informatics, so I am trying my…
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Dear author,
I am a newbie in the field of bioinfo, so I don't have much experience in data finding. May you give me the download link for the data you used?
I would be really appreciated that.
…
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I am running piper with qualimap2, I check the output of qc under /06_final_alignment_qc and see that *.log, *.out, and *.done are created but no subdirectory for actual output. I went a head and reru…
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Dear developers,
I encounter the following error when running GRASS:
Exception in thread "main" java.lang.RuntimeException: Non-positive weighted edge:>>136_Blood_comp125844_c2_seq5-->136_Blood_…
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Hi
I am trying to execute **karyoscan** and I ran into some errors and I am writing this email to seek help from your side.
So, I have installed all the dependencies (like **bcftools** , **bedto…
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After I did conda activate bioinfo, I did this;
doctor.py
# Doctor! Doctor! Give me the news.
# Checking symptoms ...
# bwa ... OK
# datamash ... OK
# fastqc -h ... OK
# hisat2 ... OK
# seqret…
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I'm rerunning a pipeline after upgrading STAR to 2.9.4 and getting this error which used not to arise for the identical job.
It is unclear why this might now happen.
There is nothing in recent r…
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I am new to bicycle and have downloaded sample data from the bicycle website (Data for E.Coli)
After the project creation, we ran the following command:
java -jar /home/admin1/Downloads/bicycle…